Enzyme structure

npj Systems Biology and Applications · 2025

SIMBA-GNN: mechanistic graph learning for microbiome prediction

Enzyme structure · CC BY-SA 4.0

Molecular Cell Biomechanics Laboratory · University of California, Berkeley

Modeling how physical forces shape living systems

403 publications · 3 domains

Explore research Browse publications

MD simulation

· 2025

Semi-supervised Retrieval of Functional Residues Through the Integration of Protein Language Mode...

MD simulation · CC BY-SA 4.0

More Publications

2025 Systems biology and microbiome innovations for personalized diabetic retinopathy management

2025 Expanding the HP1a-binding consensus and molecular grammar for heterochromatin assembly

2025 Computational drug design in the artificial intelligence era: A systematic review of molecular representati...

2025 Demographic drivers of gut microbiome diversity

2025 Emerging mechanomedicines informed by mechanotransduction along the integrin–cytoskeleton–nucleus axis

2025 KODA: An Agentic Framework for KEGG Orthology-Driven Discovery of Antimicrobial Drug Targets in Gut Microbiome

2025 SIMBA-GNN: Simulation-augmented Microbiome Abundance Graph Neural Network

2025 Block ratio optimized cationic polyacrylamides for enhanced nitrate rejection under applied potential

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Research Areas

Cell & Nuclear Biomechanics

Cell and nuclear mechanics, force transmission across the nuclear envelope, and structure-functio...

Microbiome & Bacterial Community Biomechanics

Biomechanics and multiscale modeling of host-microbe systems, bacterial communities, gut biogeogr...

Statistical Learning & Biological Language Processing

Statistical learning, biological language processing, and model-driven discovery across sequence,...