Volume 20 · 2026

Molecular Cell Biomechanics Laboratory

Molecular Cell Biomechanics Laboratory

Molecular cell biomechanics and computational biology

403 Publications 3 Research Domains University of California, Berkeley

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Contents — Recent Publications

1 SIMBA-GNN: mechanistic graph learning for microbiome prediction npj Systems Biology and Applications · 2025

2 Semi-supervised Retrieval of Functional Residues Through the Integration of Protein Language Models and Gen... · 2025

3 Systems biology and microbiome innovations for personalized diabetic retinopathy management npj Systems Biology and Applications · 2025

4 Expanding the HP1a-binding consensus and molecular grammar for heterochromatin assembly Nucleic Acids Research · 2025

5 Computational drug design in the artificial intelligence era: A systematic review of molecular representati... Pharmacological Reviews · 2025

6 Demographic drivers of gut microbiome diversity AMB Express · 2025

7 Emerging mechanomedicines informed by mechanotransduction along the integrin–cytoskeleton–nucleus axis APL Bioengineering · 2025

8 KODA: An Agentic Framework for KEGG Orthology-Driven Discovery of Antimicrobial Drug Targets in Gut Microbiome · 2025

9 SIMBA-GNN: Simulation-augmented Microbiome Abundance Graph Neural Network · 2025

10 Block ratio optimized cationic polyacrylamides for enhanced nitrate rejection under applied potential Chemical Engineering Journal · 2025

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