Modeling how physical forces shape living systems

403 publications · 3 research domains · 20+ years

Recent Publications

2025

npj Systems Biology and Applications

SIMBA-GNN: mechanistic graph learning for microbiome prediction

2025

Semi-supervised Retrieval of Functional Residues Through the Integration of Protein Language Models and Gene Ontology...

2025

npj Systems Biology and Applications

Systems biology and microbiome innovations for personalized diabetic retinopathy management

2025

Nucleic Acids Research

Expanding the HP1a-binding consensus and molecular grammar for heterochromatin assembly

More Publications

2025 Computational drug design in the artificial intelligence era: A systematic review of molecular representati...

2025 Demographic drivers of gut microbiome diversity

2025 Emerging mechanomedicines informed by mechanotransduction along the integrin–cytoskeleton–nucleus axis

2025 KODA: An Agentic Framework for KEGG Orthology-Driven Discovery of Antimicrobial Drug Targets in Gut Microbiome

2025 SIMBA-GNN: Simulation-augmented Microbiome Abundance Graph Neural Network

2025 Block ratio optimized cationic polyacrylamides for enhanced nitrate rejection under applied potential

2025 Role of pore dilation in molecular transport through the nuclear pore complex: Insights from polymer scalin...

2025 Meta Biome: a multiscale model integrating agent-based and metabolic networks to reveal spatial regu...

All 403 publications →

Research Areas

Cell & Nuclear Biomechanics

Cell and nuclear mechanics, force transmission across the nuclear envelope, and structure-functio...

Microbiome & Bacterial Community Biomechanics

Biomechanics and multiscale modeling of host-microbe systems, bacterial communities, gut biogeogr...

Statistical Learning & Biological Language Processing

Statistical learning, biological language processing, and model-driven discovery across sequence,...